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Issue with missing templates during Multimer Mode running #919

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monojun opened this issue Mar 28, 2024 · 0 comments
Open

Issue with missing templates during Multimer Mode running #919

monojun opened this issue Mar 28, 2024 · 0 comments

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@monojun
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monojun commented Mar 28, 2024

I'm currently practicing using AlphaFold Multimer with the following command:

python3 docker/run_docker.py --fasta_paths=Multimer.fasta --max_template_date=2022-12-31 --data_dir=/data0/db/AFDB/ --model_preset=multimer --output_dir=/home/test/multimer/result

Despite specifying --max_template_date=2022-12-31, I encounter an issue where the template search process stops due to the absence of recent PDB files.

Is there a solution to this problem?
And is there a way to skip the template search step if the required PDBs are not found in the downloaded database?
Thank you

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