fba
Here are 48 public repositories matching this topic...
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Jan 24, 2019 - Python
Constellab brick for genome-scale metabolic modelling
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May 27, 2024 - Python
Reproduce the figures in "Computation of condition-dependent proteome allocation reveals variability in the macro and micro nutrient requirements for growth"
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Dec 15, 2020 - Jupyter Notebook
CBMPy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
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Feb 23, 2022 - Python
CMPE 273 Assignments, labs and quizzes, Fall'18
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Jul 9, 2019 - Python
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Jul 30, 2019 - MATLAB
Collection of sphere packing and meshing algorithms.
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Jun 23, 2022 - C++
Shiny app for visualization of the toy GENREs
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Jul 14, 2021 - R
Code that uses Elementary Conversion Mode computation to obtain all relevant conversions for a constraint-based optimization problem, i.e., all possible optimal yields between the constrained nutrients and the objective function. As published in Metabolites https://doi.org/10.3390/metabo11050257
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Apr 15, 2021 - Python
A RMosek optimization interface for the Sybil package
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Jun 25, 2021 - R
Source code of various problems from HackerRank of mine
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Aug 17, 2021 - Python
Command-line program and scheduled GitHub action for publishing the BiGG model repository to BioSimulations
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Feb 1, 2024 - Python
FBAhv: FBA analysis of host-virus metabolic model (read related publication at: https://www.life-science-alliance.org/content/4/1/e202000869)
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Oct 2, 2020 - Python
A new computational pipeline that can be used to convert expression (RNA-seq) data into predicted flux potentials that indicate metabolic function
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Jan 22, 2024 - MATLAB
COBRApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
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Feb 23, 2022 - Python
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