🦠📇 Genomes to report pipeline - for Bacteria and Archaea
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Updated
Jun 2, 2024 - Python
🦠📇 Genomes to report pipeline - for Bacteria and Archaea
asyncmd is a library to write concurrent code for setup, run and analysis of molecular dynamics simulations using pythons async/await synthax.
Slurm-Mail is a drop in replacement for Slurm's e-mails to give users much more information about their jobs compared to the standard Slurm e-mails.
A DSL for data-driven computational pipelines
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
Zig bindings for Slurm
UAB Research Computing Documentation
TorchX is a universal job launcher for PyTorch applications. TorchX is designed to have fast iteration time for training/research and support for E2E production ML pipelines when you're ready.
The HPC Slurm helper simplifies job configuration with a user-friendly design, saving time through predefined settings and minimizing errors with dropdown menus. It supports real-time interaction, reusability of past configurations, and online debugging, enhancing accessibility across devices.
Slurm: A Highly Scalable Workload Manager
Scripts for use with BIOMERO
SLURM tutorial. A practical intro to array jobs, tasks and distributed computer systems in general.
Assorted scripts in Perl, Bash, R and whatsoever directly from a bioinformatician's scripts/ folder
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