A repository containing abstract classes that Bio2BEL repos should extend to be adapted to the Compath environment
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Updated
Mar 16, 2020
A repository containing abstract classes that Bio2BEL repos should extend to be adapted to the Compath environment
Resources derived from PathMe
A rerun of the simulations of a Goldbeter paper
A probabilistic programing library empowered with jax to speed up large simulations (still in progress!)
a multiomics approach on lung cancer (subtype approach)
Genome scale metabolic model for Ogataea polymorpha NCYC495.
pyEnGNet: optimized reconstruction of gene co-expression networks using multi-GPU
Automatic rule-based modeling of metabolism, protein-protein interactions, and regulation of gene expression
This repository contains the different resources derived or generated using ComPath
Integration of pathway-related information from Reactome in BEL
Modular cloning simulation with the MoClo framework in Python
An application of the rational enrichment workflow to ten subgraphs from NeuroMMSig for the Human Brain Pharmacome project (https://pharmacome.scai.fraunhofer.de)
The FALCONET R package enables to build and visualise metabolic maps of GEM automatically with aid of cellDesigner 4.4 and R platform
SigMat: A Classification Scheme for Gene Signature Matching
An Artificial Life simulator for Investigating Noogenesis
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