pyEnGNet: optimized reconstruction of gene co-expression networks using multi-GPU
-
Updated
May 13, 2024 - Cuda
pyEnGNet: optimized reconstruction of gene co-expression networks using multi-GPU
Genome scale metabolic model for Ogataea polymorpha NCYC495.
Automatic rule-based modeling of metabolism, protein-protein interactions, and regulation of gene expression
a multiomics approach on lung cancer (subtype approach)
A probabilistic programing library empowered with jax to speed up large simulations (still in progress!)
A rerun of the simulations of a Goldbeter paper
An Artificial Life simulator for Investigating Noogenesis
Modular cloning simulation with the MoClo framework in Python
Official and maintained implementation of the paper "Attention-Based Transformers for Instance Segmentation of Cells in Microstructures" [BIBM 2020].
This repository contains the different resources derived or generated using ComPath
The FALCONET R package enables to build and visualise metabolic maps of GEM automatically with aid of cellDesigner 4.4 and R platform
Integration of pathway-related information from Reactome in BEL
A repository containing abstract classes that Bio2BEL repos should extend to be adapted to the Compath environment
An application of the rational enrichment workflow to ten subgraphs from NeuroMMSig for the Human Brain Pharmacome project (https://pharmacome.scai.fraunhofer.de)
SigMat: A Classification Scheme for Gene Signature Matching
Resources derived from PathMe
Add a description, image, and links to the system-biology topic page so that developers can more easily learn about it.
To associate your repository with the system-biology topic, visit your repo's landing page and select "manage topics."