Welcome! RicePilaf is short for Rice Post-GWAS/QTL Analysis dashboard. Ok, so we are not great at acronyms; but like a flavorful rice pilaf that combines many ingredients, this RicePilaf combines information from multiple rice databases to provide insights into your QTL/GWAS loci.
If you find our work useful, please consider citing:
@article{10.1093/gigascience/giae013,
author = {Shrestha, Anish M S and Gonzales, Mark Edward M and Ong, Phoebe Clare L and Larmande, Pierre and Lee, Hyun-Sook and Jeung, Ji-Ung and Kohli, Ajay and Chebotarov, Dmytro and Mauleon, Ramil P and Lee, Jae-Sung and McNally, Kenneth L},
title = "{RicePilaf: a post-GWAS/QTL dashboard to integrate pangenomic, coexpression, regulatory, epigenomic, ontology, pathway, and text-mining information to provide functional insights into rice QTLs and GWAS loci}",
journal = {GigaScience},
volume = {13},
pages = {giae013},
year = {2024},
month = {06},
issn = {2047-217X},
doi = {10.1093/gigascience/giae013},
url = {https://doi.org/10.1093/gigascience/giae013},
eprint = {https://academic.oup.com/gigascience/article-pdf/doi/10.1093/gigascience/giae013/58080756/giae013.pdf},
}
RicePilaf-DemoVideo.mp4
For installation and usage guide, please visit the wiki.
It is advised to install the app locally.
Alternatively, you can try RicePilaf at one of the sites below.
| URL | Site | Version | Status (Date) |
|---|---|---|---|
| https://ricepilaf.bioinfodlsu.com/ | Digital Ocean (Singapore) | 1.0.3 | Running (June 6, 2024) |
| https://ricepilaf.irri.org/ https://rice-pilaf.irri.org/ |
Philippine Government Department of Science and Technology – Advanced Science and Technology Institute (DOST-ASTI) COARE – Science Cloud resource | 1.0.3 | Running (March 15, 2024) |
| http://136.239.215.114:11001/ | Dr. Andrew L. Tan Data Science Institute, De La Salle University | 1.0.3 | Running (June 6, 2024) |
If you have issues, concerns, suggestions, or questions, please contact Anish Shrestha (anish.shrestha --atmark-- dlsu.edu.ph).