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Popular repositories

  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 609 356

  2. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 280 69

  3. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    C++ 254 72

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 247 146

  5. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 132 84

  6. deepblast deepblast Public

    Neural Networks for Protein Sequence Alignment

    Python 104 17

Repositories

Showing 10 of 169 repositories
  • nixpack Public

    nix+spack = nixpack (spanix?)

    Python 37 MIT 4 1 4 Updated Jun 2, 2024
  • PyBenchFramework Public

    BenchmarkToolkit is a Python library designed to simplify and streamline benchmarking tasks. This library provides a high-level abstraction over various benchmarking functions, allowing developers to easily perform performance testing and analysis with minimal setup.

    Python 0 0 0 0 Updated Jun 2, 2024
  • nifty-ls Public

    A fast Lomb-Scargle periodogram. It's nifty, and uses a NUFFT!

    Python 11 Apache-2.0 0 1 0 Updated Jun 1, 2024
  • jax-finufft Public

    JAX bindings to the Flatiron Institute Non-uniform Fast Fourier Transform (FINUFFT) library

    Python 71 Apache-2.0 2 5 0 Updated Jun 1, 2024
  • stan-playground Public

    Run Stan models in the browser

    TypeScript 2 Apache-2.0 0 9 4 Updated Jun 1, 2024
  • comptools24 Public

    Computational Tools for PDEs with Complicated Geometries and Interfaces workshop materials, June 10-14, 2024.

    TeX 4 Apache-2.0 2 0 0 Updated Jun 1, 2024
  • sciware-command-intro Public

    demo repository for use with Sciware intro to the command line

    C 0 1 1 1 Updated Jun 1, 2024
  • nemos Public

    NEural MOdelS, a statistical modeling framework for neuroscience.

    Python 32 MIT 5 63 3 Updated May 31, 2024
  • ccq-software-build Public

    CCQ software build scripts

    Shell 10 4 0 0 Updated May 31, 2024
  • nemos-workshop-feb-2024 Public

    Materials for nemos workshop, Feb 2024

    Python 0 MIT 0 5 1 Updated May 31, 2024

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