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My collection of light bioinformatics analysis pipelines for specific tasks

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Bio-Pipeline

A collection of light bioinformatics analysis pipelines for specific tasks.

  • Synonymous calculation
  • Blast nearby (given anchors, BLAST around local regions, useful for finding CNS)
  • Lastz wrapper (print BLAST-tabular output, also parallelize the calculation)
  • BioMart connector for Python
  • Performing statistical test for gap deletion models
  • Print feature sequences given GFF file and FASTA file (e.g. extracting CDS sequences)

Dive into specific folder to view more detailed usage on each application.

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My collection of light bioinformatics analysis pipelines for specific tasks

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