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  1. zarp zarp Public

    The Zavolab Automated RNA-seq Pipeline

    Python 29 5

  2. polyAsite_workflow polyAsite_workflow Public

    Pipeline for the processing of 3' end sequencing libraries

    Python 9 2

  3. htsinfer htsinfer Public

    Infer metadata for your downstream analysis straight from your RNA-seq data

    Python 9 22

  4. PAQR_KAPAC PAQR_KAPAC Public

    scripts, pipelines and documentation to run PAQR and KAPAC; KAPAC allows to infer regulatory sequence motifs implicated in 3’ end processing changes; PAQR enables the quantification of poly(A) site…

    Python 8 4

  5. Dockerfiles Dockerfiles Public

    Dockerfile repository of the Zavolan Lab

    Perl 8 2

  6. TECtool TECtool Public

    TECtool uses mRNA and 3’ end sequencing data to identify novel terminal exons.

    Python 7 5

Repositories

Showing 10 of 36 repositories
  • Python 0 Apache-2.0 0 3 0 Updated Jun 4, 2024
  • mirflowz Public

    Snakemake workflow for the mapping and quantification of miRNAs and isomiRs from miRNA-Seq libraries.

    Python 5 MIT 0 28 6 Updated May 19, 2024
  • htsinfer Public

    Infer metadata for your downstream analysis straight from your RNA-seq data

    Python 9 Apache-2.0 22 8 0 Updated May 15, 2024
  • zarp-cli Public

    A user-friendly command-line interface for the ZARP RNA-seq analysis workflow

    Python 4 Apache-2.0 1 7 0 Updated Mar 6, 2024
  • zarp Public

    The Zavolab Automated RNA-seq Pipeline

    Python 29 Apache-2.0 5 13 (1 issue needs help) 0 Updated Mar 6, 2024
  • logo Public

    Zavolab logo

    0 CC0-1.0 0 0 0 Updated Feb 3, 2024
  • SCINPAS Public

    Single Cell Identification of Novel PolyA Sites.

    Python 2 Apache-2.0 0 3 0 Updated Dec 6, 2023
  • oligomap Public

    Oligomap is a program for fast identification of nearly-perfect matches of small RNAs in sequence databases.

    Shell 0 GPL-3.0 0 0 0 Updated Nov 13, 2023
  • scRNAsim-toolz Public

    A repository for the tools used by scRNAsim.

    Python 1 MIT 0 11 0 Updated Oct 27, 2023
  • scRNAsim Public

    The projects implements a simulation of single cell RNA sequencing (scRNA-seq), accounting for some common sources noise that complicate the analysis of the resulting data.

    Nextflow 0 MIT 0 5 0 Updated Oct 23, 2023